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MATERIALS: Preparationofglassplates: Washandrinsewellthesequencingplates.Silanizethesmallernotchedplateasfollows.ApplyasmallamountofRain-extotheinsidesurfaceofthesmallplatewithaKimwipe.Letairdrytoathinfilm.Rinsewellwithdistilledwateranddry.Anadditionalcleaningwithaglasscleanerishelpful.CleananddrytheThermoplateandplaceoverbenchwrappaper,elevatedbutlevel.Layspacersalongthesidesevenwiththetopandbottomoftheplate.Placenotchedplate,silanized-sidedown,ontopoflargerplateandclamp. Preparationofgelsolutionfor100mlofan6%8Mureagel: Placeinabeakerwithastirbarandplacethisbeakerinsidealargerbeakercontainingsomewarmwater.Stiruntildissolved.Donotheat.Measurevolumeandaddwaterto100ml.Add666μl10%ammoniumpersulfateand40μlTEMEDandstirgently.Bringupsolutionina60cc.syringeandletsolutionflowdowncenterofnotchedplatebeingcarefulnottogenerateanybubbles.Whenplatesarefilled,placeflat-edgeofsharktoothcombinafewmm-notalltheway.Clampthetopofthegeltoholdthecombandallowthegeltopolymerize(1-2hr).GelscanbepreparedinadvanceifthetopofthegeliswrappedinSaranWrap. RUNNINGSEQUENCINGGELS Torun,set-upthegelintheelectrophoresischamberbeforeremovingthecomb.Add1XTBEbuffertotheupperchamberandgentlyremovecomb.Immediatelyrinseunpolymerizedacrylamideandureafromthecombarea.Repeatthisagainbeforeyouloadyoursamples.Addbuffertothebottomchamberonlywhenyouareconfidentthattheupperchamberisnotleaking.Prerunthegel35-50wattsfor30-60min.Thegelshouldbewarmtothetouchandthesamplesshouldbeloadedontoawarmgel.Toloadsamples,turnoffpower,rinsecombarea,andplacesharkstoothcombssuchthatthetipofthecombjustmeetsthetipofthegel.Loadpreheatedsamplesbetweenthetips.Ifanumberoftemplatesarebeingrun,youcanavoidtoomuchdiffusionofyoursamplesintoadjacentlanesbyrunningtheDNAfor1or2samplesintothegelbeforeloADIngthenextset.Runthegelat35-40wattsuntilthebromophenolbluegetsclosetothebottom.Todoubleload,addadditionalsampleatthistimeandrunthegeluntilthebromophenolbluegetsclosetothebottom.Disassembletheplatescarefullymakingsurethegelstickstothebottomplate.Addfixativesolutiontogelandletsitfor>15min.DrainexcessfixativesolutionoffofthegelandplaceapieceofWhatmanpaperonthegelandpeeloff.DrythegelthoroughlyonageldryerwithSaranWrapontopofgelonly.Dryfor30-90minat80EC.RemoveSaranWrapbeforeexposingthefilm.(If,bychance,thefilmshouldsticktothegelwhenitistimetoexposeit,DONOTPUTTHEFILMINTHEPROCESSOR.NOTIFYTHEINSTRUCTOR).(For32Pgels,aSaran-Wrapped-wetgelcanbeexposedtofilmwithoutfixingordrying).For35Sgels,exposefor20-24hr.![]()
2-glassplates ![]()
1sharks-toothcombandspacers ![]()
Whatman3mmpaper ![]()
30or40%acrylamide-bis(19:1) ![]()
10XTBE ![]()
urea ![]()
10%ammoniumpersulfate ![]()
TEMED ![]()
60cc.syringe ![]()
Rain-ex ![]()
15mlof40%acrylamide-bis(19:1) ![]()
10mlof10XTBE ![]()
46gurea ![]()
~30mlwater
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